molgenis / vip
Variant Interpretation Pipeline
☆23Updated this week
Related projects ⓘ
Alternatives and complementary repositories for vip
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- ☆39Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Master of Pores 2☆23Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆19Updated this week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- TIDDIT - structural variant calling☆69Updated this week
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated last month
- ☆36Updated 7 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆30Updated 2 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆18Updated 6 months ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- Structural Variant Index☆70Updated this week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆19Updated last year
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- A new tool to infer sex from massively parallel sequencing data.☆15Updated 5 months ago
- ☆13Updated this week
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆16Updated last year