Alternatives and similar repositories for vip:

Users that are interested in vip are comparing it to the libraries listed below

• GeneDx / scramble
  ☆39Updated last year
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆32Updated 2 months ago
• fakedrtom / SVAFotate
  ☆39Updated 7 months ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 4 months ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated this week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated last month
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 9 months ago
• HipSTR-Tool / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆32Updated 3 years ago
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated last year
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆18Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 10 months ago
• ash9nov / CNV-calling-from-Target-panel-based-NGS-data
  Detection of CNVs (deletion/duplication) in target panel based NGS data
  ☆16Updated last year
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 5 years ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• SMD-Bioinformatics-Lund / gens
  ☆14Updated this week
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆29Updated 10 months ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆28Updated 2 weeks ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆21Updated last week
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• NBISweden / wgs-structvar
  Whole Genome Sequenceing Structural Variation Pipelines
  ☆16Updated 6 years ago
• srbehera / FixItFelix
  ☆22Updated 2 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆52Updated 11 months ago