☆44Sep 10, 2024Updated last year
Alternatives and similar repositories for SVAFotate
Users that are interested in SVAFotate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Apr 18, 2022Updated 3 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Feb 21, 2026Updated last month
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated 11 months ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 7 months ago
- structural variant database software☆48Feb 16, 2026Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Apr 28, 2025Updated 10 months ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 5 months ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆166Mar 12, 2026Updated last week
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 2 weeks ago
- Structural variant toolkit for VCFs☆401Updated this week
- VNTR annotation using motif selection☆41Updated this week
- ☆14Oct 17, 2024Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Annotation and Ranking of Structural Variation☆288Updated this week
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆71Updated this week
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 8 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- A VCF comparison engine for structual variant benchmarking☆23Sep 26, 2025Updated 5 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 5 months ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Tumor-normal variant calling workflow using HiFi reads☆28Mar 4, 2026Updated 2 weeks ago
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 3 months ago