☆45Sep 10, 2024Updated last year
Alternatives and similar repositories for SVAFotate
Users that are interested in SVAFotate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Apr 18, 2022Updated 3 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated this week
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- structural variant database software☆48Feb 16, 2026Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated this week
- Structural variant VCF annotation, duplicate removal and comparison☆37Oct 14, 2025Updated 5 months ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆168Mar 12, 2026Updated last month
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated last month
- Structural variant toolkit for VCFs☆404Mar 21, 2026Updated 3 weeks ago
- VNTR annotation using motif selection☆42Mar 17, 2026Updated 3 weeks ago
- ☆14Oct 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Annotation and Ranking of Structural Variation☆292Apr 3, 2026Updated last week
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆72Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- A VCF comparison engine for structual variant benchmarking☆23Sep 26, 2025Updated 6 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- A structural variation pipeline for short-read sequencing☆202Updated this week
- Tumor-normal variant calling workflow using HiFi reads☆29Mar 4, 2026Updated last month
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 3 months ago