fakedrtom / SVAFotateLinks
☆44Updated last year
Alternatives and similar repositories for SVAFotate
Users that are interested in SVAFotate are comparing it to the libraries listed below
Sorting:
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural Variant Index☆75Updated 10 months ago
- Structural variant merging tool☆55Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 3 months ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 7 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- ☆81Updated 7 months ago
- ☆35Updated 4 years ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- python plotly Circos from VCF☆40Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- ☆24Updated 6 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- ☆35Updated 3 years ago