Structural Variants ANnotator (SVAN)
☆16Mar 17, 2026Updated last month
Alternatives and similar repositories for SVAN
Users that are interested in SVAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Feb 9, 2026Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- ANI based satellite annotation☆26Mar 2, 2026Updated last month
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Geneyx Analysis API☆12Apr 9, 2026Updated last week
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Mar 25, 2026Updated 3 weeks ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 10 months ago
- HiFi error modeler and simulator with ploidy☆11Feb 12, 2026Updated 2 months ago
- TR annotation tool VAMPIRE☆18Updated this week
- Teaching modules for Human Genome Variation Lab.☆21Jun 6, 2025Updated 10 months ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 2 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- Pipelines for NGS, imputation, gwas, ...☆29Dec 18, 2019Updated 6 years ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 3 weeks ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 4 months ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆246Apr 8, 2026Updated last week
- Compare the quality of multiple genomes, along with their annotations.☆20Mar 24, 2026Updated 3 weeks ago
- ☆20Mar 13, 2026Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆114Updated this week
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Apr 4, 2026Updated 2 weeks ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated 9 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 9 months ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- Services and guidelines for normalizing drug and other therapy terms☆13Feb 26, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆187Feb 10, 2026Updated 2 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Sep 27, 2023Updated 2 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- ☆13Apr 23, 2025Updated 11 months ago
- [NeurIPS 2025] Beyond Masked and Unmasked: Discrete Diffusion Models via Partial Masking☆30Mar 18, 2026Updated last month