Structural Variants ANnotator (SVAN)
☆18Oct 16, 2026Updated 3 weeks ago
Alternatives and similar repositories for SVAN
Users that are interested in SVAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pangenome structural variation (SV) merging and deduplication☆11Oct 10, 2026Updated 3 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆23Oct 20, 2026Updated 2 weeks ago
- TR annotation tool VAMPIRE☆20Sep 2, 2026Updated 2 months ago
- ☆10Oct 16, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆12Updated this week
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last month
- ☆11Jan 4, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆41Oct 12, 2026Updated 3 weeks ago
- ☆12Jun 15, 2026Updated 4 months ago
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Detection and genotyping of structural variants☆24May 27, 2026Updated 5 months ago
- ☆14May 2, 2025Updated last year
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆22Oct 8, 2026Updated 3 weeks ago
- Project repository for the phase 3 main publication of the HGSVC☆13Feb 9, 2026Updated 8 months ago
- ANI based satellite annotation☆31Aug 6, 2026Updated 3 months ago
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- ☆12Aug 17, 2024Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Oct 26, 2026Updated last week
- ☆35Jul 13, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 7 months ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Tool for drawing gene structures from genome annotation files.☆23Jun 20, 2026Updated 4 months ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- ☆25Sep 22, 2026Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆49Mar 25, 2026Updated 7 months ago
- A tool for sniffing out the differences in vari-Ants☆60Oct 30, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Immuological gene typing and annotation for genome assembly☆42Mar 13, 2025Updated last year
- Variant Calling for the HPRC2☆20May 26, 2026Updated 5 months ago
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 2 months ago
- Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model☆10Jan 17, 2025Updated last year
- ☆167Apr 13, 2026Updated 6 months ago
- ☆10Nov 20, 2025Updated 11 months ago