metagenlab / zDBLinks
zDB: comparative bacterial genomics made easy
☆35Updated last week
Alternatives and similar repositories for zDB
Users that are interested in zDB are comparing it to the libraries listed below
Sorting:
- Calculate assocations between genes and traits☆25Updated 6 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- ☆20Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆20Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated 2 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- Analysing the genomic context of mobile genes☆11Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 2 weeks ago
- ☆13Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- ☆16Updated 4 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago