metagenlab / zDBLinks
zDB: comparative bacterial genomics made easy
☆35Updated this week
Alternatives and similar repositories for zDB
Users that are interested in zDB are comparing it to the libraries listed below
Sorting:
- Calculate assocations between genes and traits☆25Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- Bacterial GWAS analysis☆43Updated last month
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated 2 weeks ago
- Order and orientation of complete bacterial genomes☆28Updated last month
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- whole genome MLST analysis☆46Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- ☆13Updated last year
- ☆20Updated 11 months ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- plasmidVerify: plasmid contig verification tool☆13Updated 5 years ago