sak042 / WessimView external linksLinks
Wessim: Whole Exome Sequencing SIMulator using in silico exome capture
☆15Aug 18, 2020Updated 5 years ago
Alternatives and similar repositories for Wessim
Users that are interested in Wessim are comparing it to the libraries listed below
Sorting:
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Dec 4, 2018Updated 7 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- ☆11Apr 10, 2016Updated 9 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- # DNN-HMM This directory contains all the Perl scripts and MATLAB codes we writed for the identification of replication domains using DNN…☆12Jan 12, 2016Updated 10 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated last year
- Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.☆18Sep 24, 2018Updated 7 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23May 22, 2025Updated 8 months ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 3 months ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- A Cytoscape app for importing KGML(KEGG pathway XML)☆25Mar 8, 2025Updated 11 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Nov 28, 2025Updated 2 months ago
- NEAT read simulation tools☆101Jun 22, 2022Updated 3 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Sep 4, 2025Updated 5 months ago
- profile basd Illumina pair-end Reads Simulator☆28Dec 18, 2023Updated 2 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- ☆33Jan 11, 2025Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- RILseq computational protocol☆10Apr 3, 2022Updated 3 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- ☆11Feb 3, 2026Updated last week
- Crossmapped phenotype ontologies for the oncology domain☆13Feb 3, 2026Updated last week
- ☆10May 17, 2017Updated 8 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Create a citation graph from pubmed data using R☆10Nov 4, 2016Updated 9 years ago
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- A Powerful Programable RPN Calculator based on FORTH (Arduino and 7 segment display)☆12Oct 2, 2020Updated 5 years ago
- ☆11Sep 6, 2019Updated 6 years ago
- A latex template for my master thesis☆12Jul 1, 2014Updated 11 years ago