Multiplex PCR design, in silico
☆19Mar 4, 2025Updated last year
Alternatives and similar repositories for multiply
Users that are interested in multiply are comparing it to the libraries listed below
Sorting:
- 🧬 Unique (& conserved) DNA sequence identification☆15Mar 10, 2026Updated last week
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆15Nov 2, 2024Updated last year
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- ☆15May 1, 2025Updated 10 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆18Feb 26, 2026Updated 3 weeks ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 11 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.☆27Sep 20, 2023Updated 2 years ago
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 4 years ago
- Snakemake wrappers for bioinformatics.☆18Feb 8, 2023Updated 3 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated last month
- ☆11Jun 29, 2021Updated 4 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated last month
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆49Apr 2, 2025Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file☆20Oct 26, 2020Updated 5 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Jun 5, 2023Updated 2 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and …☆54Mar 4, 2026Updated 2 weeks ago