dportik / LRSW-Taxonomic-Profiling-TutorialLinks
Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at the Jackson Laboratory.
☆13Updated 3 years ago
Alternatives and similar repositories for LRSW-Taxonomic-Profiling-Tutorial
Users that are interested in LRSW-Taxonomic-Profiling-Tutorial are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- ☆20Updated 11 months ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- ☆26Updated 2 years ago
- ☆13Updated last year
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- zDB: comparative bacterial genomics made easy☆35Updated this week
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- whole genome MLST analysis☆46Updated 2 months ago
- plasmidVerify: plasmid contig verification tool☆13Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- Population genomics from metagenomes☆12Updated 11 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆19Updated last year
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- ☆19Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago