☆12Jan 29, 2020Updated 6 years ago
Alternatives and similar repositories for MSSPE-design
Users that are interested in MSSPE-design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- CZID (formerly IDseq) infectious disease command-line interface☆21Jul 22, 2024Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆41Feb 16, 2021Updated 5 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- SURPI☆86May 10, 2016Updated 9 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- ☆13Aug 15, 2025Updated 7 months ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- Terminal theme for Hexo.☆22Jul 11, 2022Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- a tool for designing primer panels for multiplex PCR.☆107Feb 5, 2024Updated 2 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Mar 12, 2026Updated last week
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 8 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 5 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Mar 13, 2026Updated last week
- ☆38Apr 14, 2022Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Oct 5, 2021Updated 4 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Feb 26, 2026Updated 3 weeks ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- ☆22Oct 31, 2025Updated 4 months ago
- Assessing the quality of genomes using busco☆14Mar 23, 2023Updated 3 years ago
- ☆10Jul 15, 2016Updated 9 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Jun 7, 2023Updated 2 years ago
- Opinionated viral metagenomics workflow☆12Updated this week
- OpenShift cartridge for DreamFactory☆10Mar 26, 2017Updated 8 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆81Dec 5, 2022Updated 3 years ago