chiulab / MSSPE-designLinks
☆12Updated 5 years ago
Alternatives and similar repositories for MSSPE-design
Users that are interested in MSSPE-design are comparing it to the libraries listed below
Sorting:
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Classifier for metagenomic sequences☆30Updated 7 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- ☆84Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Synteny Imager☆65Updated last month
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 5 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 9 months ago
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆62Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆64Updated 2 years ago
- Microbiome classification pipeline☆65Updated 7 months ago