ukhsa-collaboration / MOSTLinks
☆16Updated 6 years ago
Alternatives and similar repositories for MOST
Users that are interested in MOST are comparing it to the libraries listed below
Sorting:
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- PERF is an Exhaustive Repeat Finder☆33Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated last week
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Simulate metagenomic short reads from one or more populations.☆26Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Python3 module for running MUMmer and reading the output☆34Updated 10 months ago
- Fast viral consensus genome reconstruction☆25Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Gene-flank analysis tool☆37Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆66Updated 6 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 5 years ago