CenterForMedicalGeneticsGhent / HoplaLinks
Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML
☆15Updated 8 months ago
Alternatives and similar repositories for Hopla
Users that are interested in Hopla are comparing it to the libraries listed below
Sorting:
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 6 months ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Explore and filter structural variant calls from Lumpy and Delly VCF files☆8Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆24Updated 11 months ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 4 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Computes various SV statistics☆14Updated last year
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- Somatic point mutation caller☆17Updated 9 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆23Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆48Updated this week
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 2 years ago