MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)
☆15Jul 29, 2026Updated 3 weeks ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Danny Ma's 8 Week SQL Challenge Best Solutions on the Internet☆16Sep 20, 2024Updated last year
- ☆14Apr 30, 2020Updated 6 years ago
- MGnify RESTful API☆10Apr 10, 2026Updated 4 months ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆19Updated this week
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆23Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- QGIS svg icons - Animal silhouettes☆14Nov 17, 2018Updated 7 years ago
- ☆10Mar 19, 2020Updated 6 years ago
- Prefect worker to run flows on a Slurm HPC cluster☆19Jul 24, 2026Updated 3 weeks ago
- The website for bioboxes☆11Jun 9, 2017Updated 9 years ago
- The official implementation of DeepLTL: Learning to Efficiently Satisfy Complex LTL Specifications for Multi-Task RL (ICLR'25 Oral)☆17Mar 30, 2025Updated last year
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- ☆10Feb 6, 2021Updated 5 years ago
- A Python library for interacting with ENA's API☆25Aug 10, 2021Updated 5 years ago
- Ideas on how to quickly learn to build command-line tools☆11Feb 26, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Nov 7, 2025Updated 9 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Jul 21, 2026Updated 3 weeks ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 8 months ago
- 1) If I have to describe my project , in simple words , it would be an educational website , but not just that , it would be the best we…☆13Jul 14, 2021Updated 5 years ago
- ☆13May 15, 2026Updated 3 months ago
- RSG Turkey Student Symposium 2020 - Workshop Session☆13Dec 17, 2020Updated 5 years ago
- ☆20May 14, 2025Updated last year
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 3 years ago
- 🧠 Workshop Notebook and assets for the Anthropic Hackathon☆12Nov 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Train Large Language Models on custom datasets (Tutorials)☆13Sep 22, 2023Updated 2 years ago
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated last year
- A simple vanilla implementation of a recurrent LSTM neural network☆13Apr 29, 2017Updated 9 years ago
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated last year
- Python-based client for downloading data made available through portals powered by the GDC-based portal system..☆22Jun 10, 2026Updated 2 months ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆28Nov 3, 2023Updated 2 years ago
- Ambiente Colaborativo para Comunidades☆23Dec 5, 2016Updated 9 years ago
- MM/PBSA binding free energy calculation☆22May 31, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 5 months ago
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆32Mar 13, 2026Updated 5 months ago
- ☆14Sep 19, 2016Updated 9 years ago
- AMBER: Assessment of Metagenome BinnERs☆33Jun 23, 2026Updated last month
- Distributed job execution application built for Galaxy☆45Updated this week