HadrienG / InSilicoSeqLinks
A sequencing simulator
☆198Updated 2 months ago
Alternatives and similar repositories for InSilicoSeq
Users that are interested in InSilicoSeq are comparing it to the libraries listed below
Sorting:
- Tool to plot synteny and structural rearrangements between genomes☆306Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆260Updated 3 weeks ago
- ☆209Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- a long read simulator that can imitate many types of read problems☆221Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆232Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆138Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆278Updated 7 months ago
- A bioinformatics tool for working with modified bases☆191Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆386Updated last month
- Filtering and trimming of long read sequencing data☆205Updated 2 years ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆162Updated 3 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- Bacterial ribosomal RNA predictor☆245Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- A tool to circularize genome assemblies☆242Updated last year
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- Full-Length Alternative Isoform analysis of RNA☆228Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆282Updated 2 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Fast and accurately polish the genome generated by long reads.☆225Updated 4 months ago
- A robust, extensible metagenomics pipeline☆170Updated this week
- ☆194Updated last month
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated this week
- adapter trimmer for Oxford Nanopore reads☆362Updated last year
- Genome Assembly and Annotation Service code☆212Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆212Updated last month