A sequencing simulator
☆228Oct 7, 2026Updated this week
Alternatives and similar repositories for InSilicoSeq
Users that are interested in InSilicoSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CAMISIM: Simulating metagenomes and microbial communities☆233Jul 16, 2026Updated 2 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆480Jul 15, 2026Updated 2 months ago
- ☆20Sep 16, 2026Updated 3 weeks ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆265Updated this week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Sep 18, 2026Updated 3 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆32Mar 13, 2026Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Oct 1, 2026Updated last week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 5 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Sep 13, 2026Updated 3 weeks ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 6 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- ☆10Jun 9, 2025Updated last year
- DAS Tool☆176May 2, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated last year
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- Rapid comparison and dereplication of genomes☆358Updated this week
- ☆63Sep 15, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Oct 4, 2026Updated last week
- Aligns short reads using dynamic seed size with strobemers☆209Updated this week
- De novo genome assembly for long reads using an overlap graph☆25Updated this week
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆175Updated this week
- Local alignment search with k-bounded matching statistics.☆24Sep 16, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆250Jan 18, 2024Updated 2 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆725Oct 28, 2025Updated 11 months ago
- A genomic minhashing implementation in Rust☆100Jul 8, 2026Updated 3 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆95May 11, 2026Updated 5 months ago
- Python bindings for the TaxonKit library☆43Oct 1, 2026Updated last week
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 2 weeks ago