Alternatives and similar repositories for InSilicoSeq

Users that are interested in InSilicoSeq are comparing it to the libraries listed below

• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆308Updated 2 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆324Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆139Updated 3 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆234Updated 4 years ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆270Updated 4 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆246Updated last year
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆232Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆262Updated last month
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆161Updated last month
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆154Updated last week
• jtlovell / GENESPACE
  ☆211Updated 5 months ago
• wdecoster / chopper
  ☆198Updated 2 months ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆239Updated this week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆514Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆367Updated 3 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆242Updated last year
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆299Updated 2 weeks ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆281Updated 8 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆214Updated 2 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆139Updated last year
• kcleal / gw
  Genome browser and variant annotation
  ☆325Updated this week
• pangenome / pggb
  the pangenome graph builder
  ☆437Updated 2 weeks ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆162Updated 2 weeks ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆202Updated 10 months ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆171Updated this week
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆216Updated 2 years ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆206Updated 2 years ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆303Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆355Updated last month
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆213Updated 2 weeks ago