A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
☆16Nov 4, 2021Updated 4 years ago
Alternatives and similar repositories for LIRBase
Users that are interested in LIRBase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆14Oct 10, 2022Updated 3 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Apr 11, 2025Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45May 15, 2025Updated 10 months ago
- QTL mapping with binmap data☆18May 18, 2019Updated 6 years ago
- Integrative analysis of structural variations.☆40Dec 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- an R/shiny application for creation of Circos plot interactively☆157Sep 25, 2022Updated 3 years ago
- an R/Shiny application for interactive creation of Circos plot☆50Apr 5, 2023Updated 3 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Mar 4, 2025Updated last year
- ☆14Jul 27, 2019Updated 6 years ago
- ☆17Jul 3, 2018Updated 7 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- ☆18Feb 15, 2024Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20May 20, 2025Updated 10 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- ☆11Mar 14, 2026Updated 3 weeks ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Nov 10, 2021Updated 4 years ago
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 8 years ago
- trans-species prediction of TFBS in plants☆14Apr 26, 2021Updated 4 years ago
- ggplot2 grab bag.☆16Nov 30, 2025Updated 4 months ago
- npm from R☆19Jan 22, 2024Updated 2 years ago
- Organellar genome assembly☆29Jun 30, 2025Updated 9 months ago
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.☆39Apr 5, 2019Updated 7 years ago
- A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).☆21Aug 28, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Semantic Similarity in Bio-Ontologies☆18Jan 30, 2026Updated 2 months ago
- More robust R programming, testing and debugging☆16Feb 26, 2016Updated 10 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Oct 29, 2019Updated 6 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆17Mar 19, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20May 3, 2019Updated 6 years ago
- A Shiny App for visualizing genomic data☆19Apr 24, 2022Updated 3 years ago