YaoLab-Bioinfo / LIRBase
A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
☆16Updated 3 years ago
Alternatives and similar repositories for LIRBase:
Users that are interested in LIRBase are comparing it to the libraries listed below
- QTL mapping with binmap data☆17Updated 5 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆12Updated 8 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- The knowledge of cloned rice genes lost in the information of rice functional genomics studies☆24Updated last year
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- ☆11Updated 2 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- ☆9Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆13Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- TF-DNA-binding assay analysis pipeline☆12Updated 4 years ago
- ☆16Updated last year
- R package for binmap☆13Updated last year
- Build haplotye and generate figures☆18Updated 3 years ago
- repository for code used in analysis of open wild wheat consortium☆15Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Scripts for NGS processing☆17Updated 7 years ago
- Whole Genome Annotation Pipeline☆15Updated 11 months ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 6 years ago
- Evolutionary Transcriptomics with R☆42Updated last week
- R-package: Calculation of haplotype blocks and libraries☆30Updated 11 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆11Updated 2 months ago
- ☆10Updated 10 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- ☆14Updated 6 years ago