Utilities for analyzing next generation sequencing data.
☆16May 7, 2021Updated 5 years ago
Alternatives and similar repositories for angsd-wrapper
Users that are interested in angsd-wrapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 8 years ago
- A series of scripts to automate sequence workflows☆18Updated this week
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Updated this week
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 4 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Jun 17, 2026Updated 3 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆90Jun 14, 2021Updated 5 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- PHYLIP package starting with version 4.0a☆20Sep 4, 2026Updated last month
- Analyzing combinations of codon substitution histories☆48Updated this week
- Rescale genetic polymorphism data to match a common sample size.☆15Nov 4, 2021Updated 4 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- initial commit☆27Dec 29, 2022Updated 3 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 7 years ago
- Explore ploidy levels from NGS data alone☆46Jan 19, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Jan 11, 2024Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- software for the MAPS method☆25Mar 20, 2019Updated 7 years ago
- ☆30Aug 16, 2021Updated 5 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- ☆12Aug 16, 2016Updated 10 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Aug 21, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A set of tools for modelling ancestry patterns along the genome.☆24Aug 26, 2026Updated last month
- contains R scripts exemplifying use of multivariate mixed models in a variety of R packages.☆15Nov 8, 2017Updated 8 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 8 years ago
- ☆23Jul 5, 2026Updated 3 months ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 9 years ago