apetkau / orthomcl-pipelineLinks
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
☆80Updated 5 years ago
Alternatives and similar repositories for orthomcl-pipeline
Users that are interested in orthomcl-pipeline are comparing it to the libraries listed below
Sorting:
- Development version of Easyfig☆102Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆91Updated 2 weeks ago
- Synteny Imager☆65Updated last month
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆118Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- Documentation for Evolview☆29Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- NLR-Annotator upload☆74Updated 2 years ago
- source code for EVM☆119Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- Neural network classification of TE☆96Updated 2 months ago
- ☆71Updated 5 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- DDBJ Fast Annotation and Submission Tool☆83Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆155Updated 9 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Plastid Genome Annotator☆54Updated 5 years ago
- Interactive quality assessment of genome assemblies☆114Updated 2 weeks ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆88Updated last year
- A list of software for pangenomics☆162Updated this week
- Assembly statistic visualisation☆90Updated last year
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago