Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
☆79Jul 31, 2020Updated 6 years ago
Alternatives and similar repositories for orthomcl-pipeline
Users that are interested in orthomcl-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 6 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 9 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆65Sep 5, 2019Updated 7 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆935Updated this week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Automatically exported from code.google.com/p/prottest3☆39Jan 22, 2018Updated 8 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 9 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 9 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated 2 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 7 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Ultra-fast de novo assembler using long noisy reads☆137Feb 24, 2021Updated 5 years ago
- ☆14Jul 27, 2019Updated 7 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆127Apr 7, 2021Updated 5 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- ☆76Apr 23, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆25Mar 22, 2016Updated 10 years ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆273Updated this week
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- PASA software☆204Oct 25, 2026Updated last week
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Processing pipeline for pan-genome visulization and exploration☆147Oct 9, 2023Updated 3 years ago
- Phylogenetic orthology inference for comparative genomics☆877Jul 15, 2025Updated last year
- Plastid Genome Annotator☆58Oct 29, 2020Updated 6 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 8 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Oct 19, 2026Updated last week
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline☆402Oct 25, 2026Updated last week
- ☆17Nov 19, 2025Updated 11 months ago
- DDBJ Fast Annotation and Submission Tool☆86Oct 23, 2026Updated last week