Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
☆18Apr 10, 2026Updated this week
Alternatives and similar repositories for harpy
Users that are interested in harpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and binaries related to processing haplotagging data☆15Mar 14, 2022Updated 4 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Aug 26, 2019Updated 6 years ago
- ☆19May 27, 2022Updated 3 years ago
- Population Genetics in Julia☆53Nov 26, 2024Updated last year
- ☆30Oct 14, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 3 weeks ago
- ☆21Oct 2, 2024Updated last year
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated last week
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆27Aug 15, 2025Updated 8 months ago
- ☆15Mar 20, 2023Updated 3 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆89Updated this week
- ☆12Jun 12, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A set of functions to visualise genotypes based on a VCF☆88Jan 28, 2022Updated 4 years ago
- ☆32Jun 15, 2023Updated 2 years ago
- GONE: Scripts, programs and an example data set☆54Jul 20, 2025Updated 8 months ago
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 9 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 3 months ago
- An R Package to build and simulate coalescent models☆20Apr 3, 2026Updated last week
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 5 months ago
- ☆11Mar 14, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- PyPop: Python for Population Genomics☆25Updated this week
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 2 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- initial commit☆26Dec 29, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- ☆11Sep 28, 2021Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆113Jun 24, 2025Updated 9 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- ☆11Sep 1, 2022Updated 3 years ago