sestaton / sesbio
Bioinformatics scripts for genome analysis
☆17Updated 2 years ago
Alternatives and similar repositories for sesbio:
Users that are interested in sesbio are comparing it to the libraries listed below
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated 2 years ago
- Research repo for Yang et al., 2017 paper.☆9Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- ☆11Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆20Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Guide to transcriptome assembly & analysis☆21Updated 7 years ago
- Adapters for trimming☆30Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Example of SGTK application for E.coli dataset:☆31Updated 4 years ago
- Recommended Graphtyper pipelines☆14Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 9 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated last year