mchowdh200 / samplot-ml
☆22Updated 3 years ago
Alternatives and similar repositories for samplot-ml
Users that are interested in samplot-ml are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆34Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- ☆39Updated 8 months ago
- Structural variant merging tool☆49Updated 8 months ago
- python plotly Circos from VCF☆35Updated 10 months ago
- Structural variant caller☆54Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Detection and genotyping of structural variants☆18Updated last month
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- ☆39Updated last year
- WDL workflows for variant calling and assembly using ONT☆34Updated last week
- Algorithm to detect germline and de novo transposon insertions☆28Updated last month
- Working space for the GIAB TR benchmarking project☆21Updated 6 months ago
- ☆79Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- ☆48Updated 10 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆34Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆29Updated 4 years ago
- A battery of methylation tools for PacBio HiFi reads☆34Updated 2 months ago