girirajanlab / CN_LearnLinks
CN-Learn
☆29Updated 5 years ago
Alternatives and similar repositories for CN_Learn
Users that are interested in CN_Learn are comparing it to the libraries listed below
Sorting:
- ☆46Updated 5 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- ☆53Updated 2 years ago
- ☆39Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- Burden testing against public controls☆50Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 8 months ago
- ☆25Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆53Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- A software for calculating telomere length☆70Updated 6 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- CNV screening and annotation tool☆25Updated 8 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year