Alternatives and similar repositories for structuralVariantResources

Users that are interested in structuralVariantResources are comparing it to the libraries listed below

• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• LiLabAtVT / CompareTranscriptome
  repository of scripts for comparative transcriptome analysis
  ☆18Updated 6 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 5 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 4 months ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated last week
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆39Updated 8 months ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆46Updated 5 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆52Updated 10 months ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 8 months ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆75Updated last year
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated 2 weeks ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 3 years ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆37Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆28Updated 4 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated 2 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆25Updated last year
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• farhangus / Sniffles2_plot
  ☆31Updated 10 months ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 3 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆35Updated 2 years ago