☆14Jan 8, 2020Updated 6 years ago
Alternatives and similar repositories for snakemake-tutorial
Users that are interested in snakemake-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 7 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 3 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated 2 years ago
- Metagenome read simulation of multiple synthetic communities☆10Jan 6, 2024Updated 2 years ago
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Oct 6, 2025Updated last year
- ☆15Nov 25, 2019Updated 6 years ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 8 months ago
- repo for 2016 EDAMAME tutorials☆11Jul 20, 2016Updated 10 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- ☆23May 26, 2021Updated 5 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 8 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 8 months ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- A short tutorial on getting started with Snakemake for workflow management☆59Apr 1, 2019Updated 7 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Oct 22, 2026Updated last week
- ☆16Jul 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cookiecutter for snakemake slurm profile☆17Jul 22, 2023Updated 3 years ago
- ☆12Mar 8, 2026Updated 7 months ago
- A DRAFT, early stage book on snakemake.☆25Nov 1, 2023Updated 2 years ago
- Lesson for the shell for genomics☆11Jan 12, 2021Updated 5 years ago
- The practical material from the course Biotech 7005: Bioinformatics and Systems Modelling☆25Oct 28, 2019Updated 7 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 4 years ago
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated last year
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆36Oct 17, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NeSSie library and tool for the analysis of elements of sequence symmetry in nucleic-acids☆13Jun 26, 2018Updated 8 years ago
- Self-hosted second brain and operating engine for human and AI workspaces: topology, source evidence, memory, retrieval, agents, tools, w…☆14Updated this week
- ☆10Jul 1, 2020Updated 6 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated 2 years ago
- A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the…☆12Sep 11, 2026Updated last month
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 8 months ago
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 6 months ago