andrewSharo / StrVCTVRELinks
StrVCTVRE, a structural variant classifier for exonic deletions and duplications
☆18Updated last year
Alternatives and similar repositories for StrVCTVRE
Users that are interested in StrVCTVRE are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- ☆22Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last month
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆19Updated 2 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆48Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- SV calling for diploid assemblies☆27Updated last year
- Short Tandem Repeat disease loci resource☆18Updated last week
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- SV genotyping with long reads☆39Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- ☆41Updated 9 months ago
- Structural variant caller☆54Updated 3 years ago