andrewSharo / StrVCTVRE
StrVCTVRE, a structural variant classifier for exonic deletions and duplications
☆18Updated last year
Alternatives and similar repositories for StrVCTVRE:
Users that are interested in StrVCTVRE are comparing it to the libraries listed below
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆34Updated last month
- Structural variant caller☆54Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆14Updated 10 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- SV genotyping with long reads☆40Updated last year
- ☆17Updated last month
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- ☆22Updated 3 years ago
- ☆48Updated 10 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 11 months ago
- ☆20Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 2 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 6 months ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago