Splice junction analysis and filtering from BAM files
☆44Mar 31, 2022Updated 4 years ago
Alternatives and similar repositories for portcullis
Users that are interested in portcullis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 5 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- ☆12Sep 11, 2025Updated 10 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- De novo estimates of genetic relatedness from next-gen sequencing data☆46Jul 28, 2019Updated 6 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multi-sample transcriptome assembly from RNA-Seq☆26Jun 10, 2018Updated 8 years ago
- Model and predict short DNA sequence features with neural networks☆81Updated this week
- Scallop is a reference-based transcriptome assembler for RNA-seq☆95Apr 30, 2021Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆12Mar 21, 2026Updated 4 months ago
- ☆24Jun 7, 2024Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- ☆32Mar 3, 2026Updated 4 months ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆70Dec 2, 2022Updated 3 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- ☆21Apr 15, 2024Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 5 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 7 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 6 months ago
- Gene prediction software☆72Oct 22, 2022Updated 3 years ago
- Genome annotation pre-publication results☆36Jun 19, 2026Updated last month
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 4 months ago