EI-CoreBioinformatics / portcullis
Splice junction analysis and filtering from BAM files
☆40Updated 3 years ago
Alternatives and similar repositories for portcullis:
Users that are interested in portcullis are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- Adapters for trimming☆30Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated this week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated last month
- Genomic Association Tester☆31Updated 2 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 6 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆23Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆22Updated 4 months ago
- Personal diploid genome creation and coordinate conversion☆26Updated last month
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- ☆51Updated 5 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated this week
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago