arshajii / emaLinks
Fast & accurate alignment of barcoded short-reads
☆32Updated 2 years ago
Alternatives and similar repositories for ema
Users that are interested in ema are comparing it to the libraries listed below
Sorting:
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- ☆28Updated 6 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last week
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- Filter of Pairwise Alignement☆44Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- ☆34Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- ☆46Updated 5 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 6 months ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆27Updated last month
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated last year
- VNTR annotation using motif selection☆38Updated last month
- ☆47Updated 2 years ago