Fast & accurate alignment of barcoded short-reads
☆32Jun 29, 2023Updated 3 years ago
Alternatives and similar repositories for ema
Users that are interested in ema are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- Linked-Read Alignment Tool☆26May 16, 2019Updated 7 years ago
- 10x Genomics Reads Simulator☆46Aug 10, 2026Updated 2 months ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Dec 7, 2024Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Construct a Physical Map from Linked Reads☆20Apr 1, 2026Updated 7 months ago
- ☆13Sep 11, 2025Updated last year
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- ☆20Feb 18, 2025Updated last year
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Collection of tools and resources for linked-reads☆13Jun 26, 2026Updated 4 months ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆88Jan 7, 2026Updated 9 months ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 3 years ago
- ☆124Sep 29, 2026Updated last month
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- Sort Linked Read DNA Into Fragment Specific Clusters☆10Oct 5, 2021Updated 5 years ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 6 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ARBitR: Assembly Refinement with Barcode-identity-tagged Reads☆10Oct 22, 2020Updated 6 years ago
- compacted de Bruijn graph construction in low memory☆102Nov 4, 2025Updated 11 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆32Jul 31, 2020Updated 6 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆24Aug 2, 2022Updated 4 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆88Mar 7, 2024Updated 2 years ago