tjiangHIT / rMETLLinks
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
☆18Updated 11 months ago
Alternatives and similar repositories for rMETL
Users that are interested in rMETL are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- ☆20Updated 3 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- ☆51Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- ☆30Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 11 months ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 2 weeks ago
- Tools for merging Tandem Repeat VCF files☆32Updated 3 months ago
- Simulation toolbox for structural variations.☆9Updated 6 years ago
- This is the Haplotypo repository☆20Updated last year
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago