Alternatives and similar repositories for lightmotif

Users that are interested in lightmotif are comparing it to the libraries listed below

• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆55Updated last week
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆42Updated last week
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated 2 weeks ago
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆82Updated 2 months ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆23Updated last year
• baku4 / sigalign
  A Similarity-Guided Alignment Algorithm
  ☆28Updated 7 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆63Updated last year
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated last month
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 9 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆81Updated 2 months ago
• sanderlab / AlignmentViewer2.0
  ☆25Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 2 months ago
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆57Updated 3 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 2 weeks ago
• COMBINE-lab / pufferfish2
  ☆15Updated 2 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 8 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆89Updated 9 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 months ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆24Updated 3 years ago
• lh3 / OpenHGL
  Open Human Genome Library
  ☆56Updated 3 weeks ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 7 months ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆60Updated last year