althonos / lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
☆41Updated last week
Related projects ⓘ
Alternatives and complementary repositories for lightmotif
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆18Updated 6 months ago
- Nail is an Alignment Inference tooL☆41Updated this week
- Bidirectional WFA (Paper)☆41Updated 6 months ago
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- Single-Cell RNA-seq pseudo-aligner☆50Updated 6 months ago
- A genome browser in your Jupyter notebook☆26Updated 7 months ago
- Find common blocks and differences between DNA sequences☆40Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Single-cell analysis methods in Rust☆15Updated 5 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆20Updated 2 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆53Updated 7 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 6 months ago
- bioinformatics toolkit in rust☆78Updated 6 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆21Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆76Updated 9 months ago
- Rust bindings to minimap2 library☆67Updated this week
- Protein Sequence Annotation with Language Models☆16Updated 3 weeks ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- ☆15Updated 11 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆94Updated 5 months ago
- Fast interval intersection library☆27Updated this week
- Efficient calculation of phylogenetic distance matrices.☆45Updated last month
- ☆19Updated last week
- Deep learning embedding for nucleotide sequences☆16Updated 7 months ago
- Reference-guided multiple sequence alignment of viral genomes☆61Updated 2 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆36Updated last month