A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
☆62Feb 26, 2026Updated last week
Alternatives and similar repositories for lightmotif
Users that are interested in lightmotif are comparing it to the libraries listed below
Sorting:
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Jan 5, 2026Updated 2 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Nail is an Alignment Inference tooL☆55Feb 21, 2026Updated 2 weeks ago
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆16May 15, 2025Updated 9 months ago
- Cython bindings and Python interface to HMMER3.☆160Feb 27, 2026Updated last week
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆24Feb 23, 2026Updated last week
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆85Nov 13, 2025Updated 3 months ago
- Just another minhash implementation.☆12Feb 25, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 4 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 6 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- protein utilities in Rust☆32Nov 9, 2025Updated 3 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A Rust library for parsing, writing and manipulating Genbank sequence files☆22Apr 20, 2025Updated 10 months ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Feb 3, 2026Updated last month
- Rust bindings to minimap2 library☆109Feb 22, 2026Updated last week
- A pairwise sequence aligner written in Rust☆145Jan 27, 2026Updated last month
- A high efficiency binary format for sequencing data☆96Feb 25, 2026Updated last week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- 🧬 Efficient parallelized peta-scale protein database search☆40Jan 4, 2024Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Nov 25, 2025Updated 3 months ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Jan 12, 2024Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- Banded Striped DNA Sequence Alignment☆52May 9, 2023Updated 2 years ago