broadinstitute / delphyLinks
Fast, scalable, accurate and accessible Bayesian phylogenetics
☆40Updated 3 weeks ago
Alternatives and similar repositories for delphy
Users that are interested in delphy are comparing it to the libraries listed below
Sorting:
- Efficient and fast querying and parsing of GTDB's data☆29Updated 2 months ago
- Estimating time trees from very large phylogenies☆28Updated last year
- ☆19Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- ☆18Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Updated 4 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated last week
- Interpretative standards for AMR genotypes☆25Updated last week
- Scalable relaxed clock phylogenetic dating☆27Updated last month
- Remove human reads from a sequencing run☆40Updated 3 months ago
- ☆18Updated 3 weeks ago
- Read contamination removal☆25Updated last year
- Genome size estimation from long read overlaps☆62Updated last month
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated 10 months ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 10 months ago
- Main development repository for SpreadGL☆19Updated last year
- Working with the outputs of sourmash in R☆27Updated last year
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆24Updated 6 months ago
- ☆18Updated 6 months ago
- Neptune: Genomic Signature Discovery☆20Updated 11 months ago