Fast, scalable, accurate and accessible Bayesian phylogenetics
☆44Apr 29, 2026Updated last week
Alternatives and similar repositories for delphy
Users that are interested in delphy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- ☆10Dec 20, 2022Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Nextstrain build for avian influenza viruses☆28Apr 20, 2026Updated 2 weeks ago
- ☆24Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- Genome size estimation from long read overlaps☆86Updated this week
- ☆30Mar 6, 2025Updated last year
- Quality control for phylogenetic analyses☆13Apr 27, 2026Updated last week
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 11 months ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆20Updated this week
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 8 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆63Mar 15, 2026Updated last month
- Rapid & standardized genome annotation using protein structural information☆63Updated this week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆58Aug 6, 2023Updated 2 years ago
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- Methods to determine sequence element (unitig) presence/absence☆24Mar 6, 2026Updated 2 months ago
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ultrafast Sample Placement on Existing Trees☆140Apr 29, 2026Updated last week
- ☆21Apr 2, 2025Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 10 months ago
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- An open-source software package to power microbial genomic databases☆70Updated this week
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- Population analysis PIPEline 🛠🧬☆24Mar 2, 2026Updated 2 months ago