broadinstitute / delphyLinks
Fast, scalable, accurate and accessible Bayesian phylogenetics
☆38Updated 3 weeks ago
Alternatives and similar repositories for delphy
Users that are interested in delphy are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Estimating time trees from very large phylogenies☆26Updated 10 months ago
- Genome size estimation from long read overlaps☆56Updated last month
- ☆16Updated 2 months ago
- ☆17Updated 11 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- ☆16Updated 2 months ago
- Main development repository for SpreadGL☆18Updated 8 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Influenza data pipeline to automate genotyping assignment☆33Updated this week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- ☆17Updated this week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 5 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆18Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Fast (host) DNA sequence filtering☆33Updated last week
- Inferring global and local strict molecular clocks using root-to-tip regression☆13Updated 2 weeks ago
- Read contamination removal☆25Updated last year
- Efficient and fast querying and parsing of GTDB's data☆28Updated 2 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- ☆19Updated 11 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- Organism-specific interpretation of AMR genotypes☆12Updated last year
- A set of scripts for calculating pairwise SNP distance☆40Updated 2 years ago
- Generate basic stats for an assembly.☆12Updated 2 years ago
- Interpretative standards for AMR genotypes☆21Updated this week