broadinstitute / delphyLinks
Fast, scalable, accurate and accessible Bayesian phylogenetics
☆39Updated last week
Alternatives and similar repositories for delphy
Users that are interested in delphy are comparing it to the libraries listed below
Sorting:
- Efficient and fast querying and parsing of GTDB's data☆29Updated 3 weeks ago
- Estimating time trees from very large phylogenies☆27Updated last year
- ☆19Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- ☆18Updated last month
- ☆17Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 6 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated 2 weeks ago
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 weeks ago
- ☆12Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆22Updated this week
- Visualize microbial evolution at the SNP level!☆15Updated last month
- Remove human reads from a sequencing run☆39Updated last month
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆13Updated 2 years ago
- Read contamination removal☆25Updated last year
- Interpretative standards for AMR genotypes☆23Updated last week
- Assort phage protein sequences into phamilies using MMseqs2☆10Updated 9 months ago
- Genome size estimation from long read overlaps☆60Updated 2 weeks ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 9 months ago
- Main development repository for SpreadGL☆19Updated 11 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- De novo VIral Genome Annotator☆23Updated last year
- Variant call verification☆16Updated 4 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year