MDU-PHL / emmtyperLinks
emm Automatic Isolate Labeller
☆12Updated 9 months ago
Alternatives and similar repositories for emmtyper
Users that are interested in emmtyper are comparing it to the libraries listed below
Sorting:
- Bacterial surveillance pipeline.☆26Updated last week
- in silico typing of the H. influenzae cap locus☆12Updated last year
- Assembly of Nanopore Sequencing☆17Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 2 months ago
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆20Updated 2 months ago
- Code Safety Inspection Service☆20Updated 3 years ago
- Calculate confidence scores from Kraken2 output☆23Updated last year
- Plasmid exploration of bacterial genomes☆23Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 6 months ago
- Archived - please see updated sccmec tool at link below☆13Updated last year
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆23Updated last year
- UPHL's Reference Free Pipeline☆27Updated 2 months ago
- REcombination BARcode detector.☆16Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- ☆10Updated 8 months ago
- Recombination-free trees☆63Updated 4 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 8 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Order and orientation of complete bacterial genomes☆29Updated 5 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14Updated 7 months ago
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Updated last year
- A simple pipeline for bacterial assembly and quality control☆17Updated 3 weeks ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 3 years ago