MDU-PHL / emmtyperLinks
emm Automatic Isolate Labeller
☆11Updated 2 months ago
Alternatives and similar repositories for emmtyper
Users that are interested in emmtyper are comparing it to the libraries listed below
Sorting:
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- A simple pipeline for bacterial assembly and quality control☆17Updated 2 weeks ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated 7 months ago
- Basic workflow for nanopore sequencing data☆16Updated this week
- ☆10Updated last month
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆10Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Code Safety Inspection Service☆20Updated 2 years ago
- REcombination BARcode detector.☆13Updated last year
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Archived - please see updated sccmec tool at link below☆13Updated 9 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆11Updated last week
- in silico typing of the H. influenzae cap locus☆12Updated 10 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆21Updated 8 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆28Updated last month
- ☆21Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Calculate confidence scores from Kraken2 output☆22Updated last year
- Recombination-free trees☆58Updated 2 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 2 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Plasmid analysis using rearrangement distances☆42Updated last week