emm Automatic Isolate Labeller
☆15Mar 25, 2025Updated last year
Alternatives and similar repositories for emmtyper
Users that are interested in emmtyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 3 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Bacterial surveillance pipeline.☆28Jul 10, 2026Updated 2 weeks ago
- ☆15Mar 12, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 4 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 3 weeks ago
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- ☆23Jul 22, 2026Updated last week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆93Updated this week
- Reference-based consensus creation☆61Updated this week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Apr 16, 2025Updated last year
- ☆24Feb 2, 2026Updated 5 months ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆58Updated this week
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- The tool for in silico serotyping☆66Jul 21, 2026Updated last week
- UPHL's Reference Free Pipeline☆29Jul 17, 2026Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Influenza data pipeline to automate genotyping assignment☆44Mar 19, 2026Updated 4 months ago
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆23Jun 5, 2026Updated last month
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- Extract subsets of ONT (Nanopore) reads based on time☆25Sep 12, 2024Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆78Updated this week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated 2 months ago
- A Python package to update the MLST database for the mlst tool.☆29Jul 22, 2026Updated last week
- Datasets for https://github.com/nextstrain/nextclade☆46Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆63Updated this week
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆16Feb 19, 2026Updated 5 months ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Jul 9, 2026Updated 2 weeks ago