emm Automatic Isolate Labeller
☆15Mar 25, 2025Updated last year
Alternatives and similar repositories for emmtyper
Users that are interested in emmtyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Bacterial surveillance pipeline.☆28Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆77Updated this week
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 3 months ago
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated last year
- Reference-based consensus creation☆61Jul 1, 2026Updated last week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 3 months ago
- ☆24Feb 2, 2026Updated 5 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated 11 months ago
- UPHL's Reference Free Pipeline☆29Jul 1, 2026Updated last week
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated last month
- ☆22Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- ☆10Apr 16, 2025Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆22Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Datasets for https://github.com/nextstrain/nextclade☆46Updated this week
- ☆64Jun 3, 2026Updated last month
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Software for the Tree-Based Scan Statistic☆17Jun 17, 2026Updated 3 weeks ago
- Finding regions of similarity between plasmids☆17Updated this week
- Reorients assembled microbial sequences☆141Jun 30, 2026Updated last week
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆16Feb 19, 2026Updated 4 months ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 3 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Apr 22, 2026Updated 2 months ago
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆144Jun 10, 2026Updated 3 weeks ago