mbhall88 / ontimeLinks
Extract subsets of ONT (Nanopore) reads based on time
☆23Updated last year
Alternatives and similar repositories for ontime
Users that are interested in ontime are comparing it to the libraries listed below
Sorting:
- Predict MLST directly from uncorrected long reads☆27Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Recombination-free trees☆60Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆101Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 3 months ago
- Genome size estimation from long read overlaps☆62Updated last week
- Colinear block visualisation tool☆31Updated last year
- Assembly of Nanopore Sequencing☆16Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- UPHL's Reference Free Pipeline☆27Updated 3 weeks ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Remove human reads from a sequencing run☆40Updated 3 months ago
- Calculate confidence scores from Kraken2 output☆23Updated last year
- Plasmid analysis using rearrangement distances☆46Updated last month
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Intra-species bacterial contamination detection☆25Updated 8 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Gene-flank analysis tool☆33Updated 10 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Predict plasmids from uncorrected long read data☆41Updated this week
- Order and orientation of complete bacterial genomes☆29Updated 3 months ago
- Archived - please see updated sccmec tool at link below☆13Updated last year