Extract subsets of ONT (Nanopore) reads based on time
☆26Sep 12, 2024Updated 2 years ago
Alternatives and similar repositories for ontime
Users that are interested in ontime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- ☆10Apr 16, 2025Updated last year
- Reference-based consensus creation☆61Updated this week
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated last week
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- Randomly subsample sequencing reads or alignments☆278Oct 5, 2026Updated last week
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Sep 29, 2026Updated 2 weeks ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- ☆24Sep 3, 2026Updated last month
- ☆23Sep 22, 2026Updated 3 weeks ago
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆29Sep 30, 2026Updated 2 weeks ago
- ☆38Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated last week
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline for creating comprehensive viral reference sets.☆12Sep 17, 2026Updated last month
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated 2 months ago
- Submit slurm sbatch jobs without a script☆77Aug 6, 2026Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 4 months ago
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 7 months ago
- Influenza data pipeline to automate genotyping assignment☆45Sep 10, 2026Updated last month
- ☆22Sep 30, 2026Updated 2 weeks ago
- Repo for PrimerSchemes☆20Sep 14, 2026Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago