mbhall88 / ontime
Extract subsets of ONT (Nanopore) reads based on time
☆21Updated 8 months ago
Alternatives and similar repositories for ontime
Users that are interested in ontime are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 2 months ago
- Remove human reads from a sequencing run☆40Updated 7 months ago
- Genome size estimation from long read overlaps☆55Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆28Updated this week
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Recombination-free trees☆58Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated 7 months ago
- Colinear block visualisation tool☆31Updated last year
- Calculate confidence scores from Kraken2 output☆22Updated last year
- Basic workflow for nanopore sequencing data☆16Updated 3 weeks ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆34Updated 5 months ago
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- in silico typing of the H. influenzae cap locus☆12Updated 10 months ago
- Plasmid analysis using rearrangement distances☆42Updated 6 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated last month
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆26Updated last week
- CFSAN Shigella Typing Pipeline☆14Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 3 weeks ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Order and orientation of complete bacterial genomes☆27Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 3 weeks ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago