guigolab / bamstats
A command line tool to compute mapping statistics from a BAM file
☆23Updated 3 years ago
Alternatives and similar repositories for bamstats:
Users that are interested in bamstats are comparing it to the libraries listed below
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Evolutionary Transcriptomics with R☆42Updated last week
- CADD-SV – a framework to score the effect of structural variants☆14Updated last month
- Adapters for trimming☆30Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 weeks ago
- ☆23Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 6 months ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated last year
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- A series of scripts to automate sequence workflows☆19Updated 6 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated this week
- ☆22Updated 2 weeks ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago