slowkow / snakefilesLinks
Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
☆93Updated 7 years ago
Alternatives and similar repositories for snakefiles
Users that are interested in snakefiles are comparing it to the libraries listed below
Sorting:
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- ☆117Updated last year
- ATAC-seq snakemake pipeline☆89Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- ☆49Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 9 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- ☆69Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- microRNA profiling pipeline☆78Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago