Alternatives and similar repositories for scRNA-seq-workshop-Fall-2019

Users that are interested in scRNA-seq-workshop-Fall-2019 are comparing it to the libraries listed below

• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• neuhausi / single-cell-viewer
  R package to visualize scRNA sequencing data.
  ☆20Updated 3 years ago
• ThomasCarroll / ATAC_Workshop
  ATAC_seq Workshop
  ☆14Updated 7 years ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆40Updated last year
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆21Updated last year
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 6 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆38Updated 3 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 7 months ago
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆56Updated 5 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• haibol2016 / ATACseqQCWorkshop
  ATACseqQC tutorials for BioC 2019 workshop
  ☆18Updated 4 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated 5 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated 2 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆35Updated last year
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆76Updated 3 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 3 weeks ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago