Alternatives and similar repositories for IBiS-Bootcamp

Users that are interested in IBiS-Bootcamp are comparing it to the libraries listed below

• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• trvrb / phylodynamics-lecture
  Lecture on viral phylodynamics
  ☆12Updated 3 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• nickloman / ebov
  Ebola virus surveillance
  ☆16Updated 8 years ago
• dnanexus-archive / Readshift
  Readshift: A method to shift high-quality NGS datasets into noisy datasets
  ☆1Updated 6 years ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆17Updated last month
• lucasnell / jackalope
  A swift, versatile phylogenomic and high-throughput sequencing simulator
  ☆8Updated last year
• kkdey / aRchaic
  Exploration, clustering, visualization and classification of DNA damage patterns
  ☆19Updated 4 years ago
• cbg-ethz / smallgenomeutilities
  smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.
  ☆11Updated last week
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• seqeralabs / nf-dragen
  POC Nextflow pipeline to run Illumina DRAGEN software
  ☆11Updated 3 months ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 7 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 5 years ago
• ChillarAnand / fadapa
  FAstqc DAta PArser - A minimal parser to parse FastQC output data.
  ☆16Updated 9 years ago
• lotharwissler / bioinformatics
  ☆10Updated 12 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 5 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• MonashBioinformaticsPlatform / bio-ansible
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server
  ☆24Updated last year
• jlanga / smsk
  Snakemake skeleton - Build workflows with Snakemake
  ☆17Updated last year
• xguse / blacktie
  Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
  ☆26Updated 9 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago