AndersenLab / IBiS-BootcampLinks
☆40Updated 8 years ago
Alternatives and similar repositories for IBiS-Bootcamp
Users that are interested in IBiS-Bootcamp are comparing it to the libraries listed below
Sorting:
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- POC Nextflow pipeline to run Illumina DRAGEN software☆11Updated 3 months ago
- Readshift: A method to shift high-quality NGS datasets into noisy datasets☆1Updated 6 years ago
- Visualization and charting JS library for streaming genomic data☆19Updated 6 months ago
- pre-process illumina reads☆18Updated 2 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Updated 10 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 2 weeks ago
- ☆28Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 9 months ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.☆11Updated last month
- Genetics training camp☆21Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Lecture on viral phylodynamics☆12Updated 3 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Project Organization and Management for Genomics☆24Updated last week
- Easily run WDL workflows on GCP☆13Updated 3 years ago