crazyhottommy / pyflow-scATACseqLinks
snakemake workflow for post-processing scATACseq data
☆22Updated 5 years ago
Alternatives and similar repositories for pyflow-scATACseq
Users that are interested in pyflow-scATACseq are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- Tutorial Website☆60Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆72Updated 2 years ago
- RNA editing tests☆17Updated 5 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated 2 weeks ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- ☆17Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- ☆32Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year