snakemake workflow for post-processing scATACseq data
☆23Jul 15, 2020Updated 6 years ago
Alternatives and similar repositories for pyflow-scATACseq
Users that are interested in pyflow-scATACseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆40Aug 8, 2019Updated 7 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆43Nov 13, 2023Updated 2 years ago
- Single Cell Cluster Evaluation☆101Jul 28, 2021Updated 5 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated last month
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 5 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 6 months ago
- ☆15Jul 21, 2022Updated 4 years ago
- ☆41Jul 3, 2025Updated last year
- my notes for scATACseq analysis☆134Apr 24, 2024Updated 2 years ago
- API for HOMER in R for Genomic Analysis using Tidy Conventions☆19Dec 1, 2021Updated 4 years ago
- Implementation of the matrixStats API for sparse matrices☆55Apr 2, 2025Updated last year
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆15Oct 27, 2021Updated 4 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆22Jul 23, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Jul 29, 2025Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆83Mar 16, 2026Updated 4 months ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆26Nov 26, 2023Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jul 12, 2026Updated last month
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- ATAC-seq snakemake pipeline☆91Feb 13, 2020Updated 6 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆35Apr 20, 2026Updated 3 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- ☆92Dec 1, 2024Updated last year
- ☆29May 20, 2023Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago