snakemake-workflows / single-cell-rna-seqLinks
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
☆103Updated 2 years ago
Alternatives and similar repositories for single-cell-rna-seq
Users that are interested in single-cell-rna-seq are comparing it to the libraries listed below
Sorting:
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆117Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 9 months ago
- Links to ATAC-seq analysis tools☆71Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Basic workflow for ATAC-seq analysis☆90Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- ☆120Updated 2 years ago
- ☆118Updated 7 years ago
- ☆63Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- Java tools for analyzing Drop-seq data☆130Updated last week
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- Tools for single-cell data processing☆127Updated last year
- Genetic multiplexing of barcoded single cell RNA-seq☆130Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- ☆88Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆154Updated 2 weeks ago
- ☆90Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago