Zhang-lab / BeCorrect
☆14Updated 4 years ago
Alternatives and similar repositories for BeCorrect:
Users that are interested in BeCorrect are comparing it to the libraries listed below
- ATAC-seq processing pipeline☆32Updated 2 years ago
- An analysis toolkit for single-cell methylation sequencing data☆16Updated last week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Statistically Significant loops from HiChIP data☆40Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated this week
- ☆24Updated 3 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆16Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆18Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- ☆17Updated 4 years ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆12Updated 4 years ago
- RNA editing tests☆17Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Tutorial Website☆57Updated 4 years ago
- ☆46Updated 7 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago