RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
☆25Jul 22, 2026Updated 3 months ago
Alternatives and similar repositories for rnaseq-pipeline
Users that are interested in rnaseq-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Dec 19, 2022Updated 3 years ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated 2 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Mar 12, 2018Updated 8 years ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Notepad++ Color Scheme for Sublime Text☆10Oct 10, 2026Updated 3 weeks ago
- Local NCBI BLAST+ Search☆13Jan 22, 2026Updated 9 months ago
- ☆23Mar 26, 2021Updated 5 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆37Jun 30, 2024Updated 2 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- Genomics data re-analysis☆23Updated this week
- cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of …☆12Oct 22, 2026Updated last week
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated last year
- An R wrapper for the Gemma RESTful API☆10Oct 3, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Stitching of large tiled datasets☆23Oct 22, 2026Updated last week
- UC Berkeley PhD thesis template☆11Jun 5, 2016Updated 10 years ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- scripts to automate illumina secondary analysis pipeline☆10Nov 2, 2019Updated 6 years ago
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 7 years ago
- ☆11Dec 11, 2022Updated 3 years ago
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28May 31, 2023Updated 3 years ago
- Functional templating for Vala☆18Oct 27, 2017Updated 9 years ago
- A subclass of Mike McCauley's excellent AccelStepper library (http://www.airspayce.com/mikem/arduino/AccelStepper) that uses an encoder t…☆11Mar 9, 2014Updated 12 years ago
- notebook repository☆12Jan 17, 2022Updated 4 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- Analysis of Chromosomal Aberrations from RNA-Seq sequencing data.☆10Apr 2, 2019Updated 7 years ago
- Phage Annotation Workshop 2021☆14Dec 6, 2021Updated 4 years ago
- Registration toolbox for microscopy images integrated in imaging mass spectrometry experiments☆10Jan 15, 2020Updated 6 years ago
- LibreOffice MCP Extension - AI assistant integration for LibreOffice via Model Context Protocol☆16Sep 10, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Carpentries-style lesson on RNA-Sequencing☆21May 1, 2023Updated 3 years ago
- automatic update Clinvar db for ANNOVAR☆11Updated this week
- Tool for computation of the minimal coverage depth for given variant allele frequency and probability of sequencing error.☆12Aug 24, 2020Updated 6 years ago
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- 🧠 AI based Indian stock market prediction with deep learning framework. Predicts 5-day OHLC prices + Buy/Hold/Sell Signals with candlest…☆27Updated this week
- alternative splicing analysis pipeline☆20Apr 9, 2021Updated 5 years ago
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Oct 14, 2026Updated 2 weeks ago