crazyhottommy / pyflow-cellranger
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
☆16Updated 5 years ago
Alternatives and similar repositories for pyflow-cellranger:
Users that are interested in pyflow-cellranger are comparing it to the libraries listed below
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 10 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- scWGCNA☆58Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- R package for the analysis of single-cell immune repertoires☆42Updated last month
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆47Updated 2 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆30Updated 2 months ago
- ☆60Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆40Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- ☆59Updated 5 years ago
- Pan-Cancer Single Cell Classifier☆66Updated 9 months ago
- ☆53Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Create cisTarget databases☆46Updated last month
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year