crazyhottommy / pyflow-cellrangerLinks
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
☆16Updated 5 years ago
Alternatives and similar repositories for pyflow-cellranger
Users that are interested in pyflow-cellranger are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- ☆41Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Create cisTarget databases☆50Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last month
- scWGCNA☆60Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- ☆39Updated 3 years ago
- ☆32Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆61Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 9 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆54Updated 5 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆53Updated last year
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- ☆62Updated 4 years ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- ☆41Updated 3 weeks ago
- Functional Inference of Gene Regulation☆44Updated 10 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year