crazyhottommy / pyflow-cellrangerLinks
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
☆16Updated 5 years ago
Alternatives and similar repositories for pyflow-cellranger
Users that are interested in pyflow-cellranger are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆74Updated last week
- Pan-Cancer Single Cell Classifier☆78Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- ☆39Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- ☆59Updated last year
- ☆35Updated 6 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆63Updated 4 years ago
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 10 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆53Updated 11 months ago
- ☆47Updated 3 years ago
- Create cisTarget databases☆53Updated 2 months ago