crazyhottommy / pyflow-cellrangerLinks
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
☆16Updated 6 years ago
Alternatives and similar repositories for pyflow-cellranger
Users that are interested in pyflow-cellranger are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- scWGCNA☆61Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Easy and comprehensive biological network reconstruction and analysis☆33Updated 2 months ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆43Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- ☆32Updated 9 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆29Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆55Updated 4 years ago
- ☆44Updated last year
- ☆59Updated last year
- ☆39Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- ☆37Updated 8 months ago
- ☆61Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆36Updated this week
- ☆43Updated 5 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Create cisTarget databases☆54Updated 4 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Using TCR and expression for sequence embedding☆60Updated 2 months ago