higlass / higlass-arcsView external linksLinks
HiGlass track for displaying arcs between disconnected regions
☆10Dec 13, 2022Updated 3 years ago
Alternatives and similar repositories for higlass-arcs
Users that are interested in higlass-arcs are comparing it to the libraries listed below
Sorting:
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆31May 31, 2022Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39May 3, 2025Updated 9 months ago
- ☆10Nov 3, 2025Updated 3 months ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 2 years ago
- Server component for HiGlass that manages and serves tiled data☆20May 23, 2023Updated 2 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Nov 24, 2025Updated 2 months ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Jan 20, 2026Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆12Nov 4, 2022Updated 3 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- ☆37Aug 24, 2025Updated 5 months ago
- Bringing core concepts from anywidget to R☆20Aug 10, 2025Updated 6 months ago
- ☆13Sep 4, 2025Updated 5 months ago
- Python bindings to UCSC BigWig and BigBed library☆35Jan 28, 2026Updated 2 weeks ago
- Visual exploration of large genome interaction matrices with interactive small multiples.☆13Dec 1, 2021Updated 4 years ago
- Different and fast approaches to rendering rectangles in your browser☆17Feb 25, 2016Updated 9 years ago
- Buffer compression and transformation codecs☆36Feb 21, 2025Updated 11 months ago
- Modified RBush — a high-performance JavaScript R-tree-based 2D spatial index for AABBs☆19Apr 10, 2020Updated 5 years ago
- A cool place to store your Hi-C☆231Jan 28, 2026Updated 2 weeks ago
- ☆21Dec 26, 2025Updated last month
- Cooler demo using a Jupyter notebook Binder☆18Sep 24, 2020Updated 5 years ago
- Fast, flexible and extensible genome browser.☆339Updated this week
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 4 years ago
- A library for history/provenance tracking in web-based visualizations.☆23Jan 31, 2023Updated 3 years ago
- Redesigning the Patient Portal Experience with SMART on FHIR.☆23Feb 3, 2026Updated last week
- Parse BAM and BAM index files in javascript for node and the browser☆24Jan 19, 2026Updated 3 weeks ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year
- 1D interval tree☆72Mar 6, 2023Updated 2 years ago
- Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics☆29Sep 9, 2024Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Genomic interval operations on Pandas DataFrames☆188Feb 2, 2026Updated last week
- ☆34Oct 10, 2020Updated 5 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Oct 21, 2023Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35May 4, 2023Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago