higlass / higlass-arcs

Related projects: ⓘ

• pkerpedjiev / negspy
  Python NGS Repository
  ☆9Updated last month
• deeptools / HiCMatrix
  ☆11Updated 4 months ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆41Updated last year
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆38Updated 3 weeks ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 2 years ago
• nvictus / lavaburst
  Chromatin domains bursting with flavor
  ☆12Updated 4 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆27Updated 4 years ago
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆31Updated 2 years ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 3 years ago
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆29Updated last month
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated last year
• agalitsyna / avTAD
  Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
  ☆10Updated 3 years ago
• jordanlab / tagore
  The script presents a simple way to visualize features on human chromosome ideograms
  ☆38Updated last year
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• agalitsyna / RedClib
  Red-C data processing
  ☆12Updated last year
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 5 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆33Updated 3 weeks ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆22Updated this week
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆22Updated last year
• InscriptaLabs / BioCantor
  ☆21Updated 11 months ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆21Updated last year
• nf-core / omicsgenetraitassociation
  A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
  ☆10Updated 4 months ago
• VALIS-software / valis-hpgv
  High performance WebGL genome visualization
  ☆14Updated 2 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆40Updated 3 years ago
• ay-lab / selfish
  SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
  ☆17Updated last year
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆26Updated last year
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆21Updated 2 months ago
• abyzovlab / vcf2diploid
  personal genome constructor
  ☆9Updated 2 months ago
• ay-lab / HiCtrans
  HiCtrans is a pipeline to call translocations from Hi-C data
  ☆15Updated 2 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆36Updated 3 years ago