Alternatives and similar repositories for higlass-arcs

Users that are interested in higlass-arcs are comparing it to the libraries listed below

• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated 7 months ago
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆35Updated this week
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆31Updated 3 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated last year
• VALIS-software / valis-hpgv
  High performance WebGL genome visualization
  ☆15Updated 4 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 8 months ago
• deeptools / HiCMatrix
  ☆13Updated 3 months ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated 11 months ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆42Updated this week
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated this week
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆64Updated 3 weeks ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• higlass / higlass-server
  Server component for HiGlass that manages and serves tiled data
  ☆20Updated 2 years ago
• aidenlab / JuiceboxLegacy
  OLD REPOSITORY - Go to
  ☆31Updated 7 years ago
• higlass / higlass-pileup
  ☆10Updated last month
• nvictus / lavaburst
  Chromatin domains bursting with flavor
  ☆12Updated 5 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated last year
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 8 years ago
• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆21Updated last month
• agalitsyna / avTAD
  Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
  ☆10Updated 4 years ago
• agalitsyna / RedClib
  Red-C data processing
  ☆15Updated 2 years ago
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆74Updated last year
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆30Updated 8 months ago
• harvardinformatics / NGmerge
  Merging paired-end reads and removing adapters
  ☆30Updated 5 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• InscriptaLabs / BioCantor
  ☆22Updated 2 years ago