Alternatives and similar repositories for FM-summary

Users that are interested in FM-summary are comparing it to the libraries listed below

• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated last month
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆32Updated 10 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 9 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆29Updated 9 months ago
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆18Updated 3 months ago
• gcb-hub / BLISS
  ☆11Updated last month
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• LizaDarrous / PheWAS-cluster
  ☆20Updated 11 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆29Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated last year
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• YuyingLi-X / HDL-L
  The local version of high-definition likelihood inference of genetic correlations (HDL-L)
  ☆11Updated 3 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• borangao / MESuSiE
  ☆17Updated 8 months ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 3 years ago
• cuelee / pleio
  ☆19Updated last year
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 6 months ago
• precimed / gsa-mixer
  ☆16Updated 5 months ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated this week
• jiazhao97 / BWMR
  BWMR (Bayesian Weighted Mendelian Randomization)
  ☆19Updated 2 years ago
• opain / Inferred-functional-risk-scoring
  R script for generating functionally informed genetic risk scores from TWAS
  ☆11Updated 2 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆38Updated 3 years ago