TiffanyAmariuta / TCSC
TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
☆12Updated last month
Related projects ⓘ
Alternatives and complementary repositories for TCSC
- ☆11Updated 2 years ago
- Cross-population analysis using GWAS summary statistics☆17Updated 4 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆17Updated 4 years ago
- GWAS genetics Fine-mapping method☆16Updated 3 weeks ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆24Updated 6 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆30Updated last month
- Software to infer latent pleiotropic components from GWAS summary data☆12Updated last month
- ☆23Updated 4 years ago
- Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆17Updated this week
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆17Updated 3 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆13Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆21Updated 10 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆40Updated 3 years ago
- ☆17Updated 8 months ago
- ☆20Updated this week
- Pleiotropy-informed conditional and conjunctional false discovery rate☆24Updated 11 months ago
- ☆22Updated 5 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆16Updated 2 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆22Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆39Updated 6 years ago
- corrplot of LDSC genetic correlation results☆45Updated 2 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆16Updated 5 months ago
- ☆32Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆50Updated 2 years ago
- ☆13Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 7 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆15Updated 6 months ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year