TiffanyAmariuta / TCSCLinks
TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
☆13Updated last year
Alternatives and similar repositories for TCSC
Users that are interested in TCSC are comparing it to the libraries listed below
Sorting:
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆21Updated last month
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Updated 4 years ago
- ☆34Updated last week
- Cross-population analysis using GWAS summary statistics☆18Updated last year
- Tissue-Gene Fine-Mapping☆26Updated 7 months ago
- ☆27Updated 7 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated last week
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆34Updated 4 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆35Updated 5 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 4 years ago
- ☆13Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated last year
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- GWAS genetics Fine-mapping method☆26Updated last year
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆15Updated last month
- ☆11Updated 3 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 4 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆38Updated last year
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 9 months ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 3 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆14Updated 4 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Updated 9 months ago
- Estimate genetic correlation using predicted expression☆23Updated 7 years ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆13Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- MR-link-2: pleiotropy robust cis MR☆20Updated 3 months ago
- ☆27Updated 5 years ago