Alternatives and similar repositories for TCSC

Users that are interested in TCSC are comparing it to the libraries listed below

• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated last year
• konumat / Trans-Phar
  GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
  ☆18Updated 4 years ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 11 months ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• LidaWangPSU / EXPRESSO
  EXpression PREdiction with Summary Statistics Only
  ☆10Updated last year
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 2 years ago
• marcoralab / MRcovid
  ☆11Updated 3 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆16Updated 2 weeks ago
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆37Updated 3 months ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 4 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated last week
• hakyimlab / brainxcan
  ☆8Updated 4 months ago
• lilab-bioinfo / xQTLbiolinks
  xQTLbiolinks: an R package for integrative analysis with xQTL data
  ☆17Updated last year
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 7 months ago
• Kyoko-wtnb / FUMA-circos-plot
  Configs and descriptions of circos plots created on FUMA web application
  ☆15Updated 7 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆24Updated 8 months ago
• hbliu / Open4Gene
  Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis
  ☆12Updated last month
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆32Updated last year
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆29Updated 3 weeks ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 10 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated this week
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆17Updated 3 months ago
• borangao / MESuSiE
  ☆17Updated 6 months ago
• hakyimlab / scPrediXcan
  ☆23Updated 3 weeks ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 2 years ago
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆17Updated 9 months ago