Alternatives and similar repositories for fusion_twas

Users that are interested in fusion_twas are comparing it to the libraries listed below

• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆85Updated 3 years ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 2 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆49Updated 3 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆68Updated 2 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆53Updated 4 months ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆85Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 11 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆51Updated this week
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆122Updated 2 months ago
• PMBio / peer
  A factor analysis package
  ☆101Updated 13 years ago
• weizhouUMICH / SAIGE
  ☆194Updated 3 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆44Updated 3 years ago
• fhormoz / caviar
  ☆62Updated 3 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 5 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated last month
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆60Updated 6 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆171Updated last month
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆124Updated 9 months ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆35Updated 3 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆70Updated 4 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆89Updated 9 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆81Updated last week
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week