Alternatives and similar repositories for LAVA

Users that are interested in LAVA are comparing it to the libraries listed below

• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆58Updated 4 years ago
• mglev1n / ldscr
  LD Score Regression in R
  ☆51Updated 5 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆186Updated last month
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆21Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆125Updated last month
• jean997 / cause
  R package for CAUSE
  ☆56Updated 2 years ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆38Updated 4 months ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• zhilizheng / SBayesRC
  ☆46Updated 6 months ago
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆93Updated last month
• gamazonlab / MR-JTI
  ☆57Updated last year
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆94Updated last week
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• n-mounier / MRlap
  R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples
  ☆67Updated last year
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆105Updated last month
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆119Updated 3 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆23Updated 4 months ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆95Updated 2 years ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆39Updated last year
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆87Updated 3 years ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆76Updated last week
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆25Updated last week
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• clagiamba / moloc
  ☆38Updated 4 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆35Updated 6 months ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆32Updated 9 months ago
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆42Updated last year