josefin-werme / LAVALinks
☆78Updated last month
Alternatives and similar repositories for LAVA
Users that are interested in LAVA are comparing it to the libraries listed below
Sorting:
- Hypothesis Prioritisation in multi-trait Colocalization☆55Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆56Updated 4 years ago
- LD Score Regression in R☆50Updated 3 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆21Updated 3 years ago
- High-definition likelihood inference of genetic correlations (HDL)☆124Updated 5 months ago
- R package for CAUSE☆56Updated last year
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆36Updated 2 months ago
- Repo for the R package coloc☆183Updated this week
- ☆30Updated 4 years ago
- corrplot of LDSC genetic correlation results☆56Updated 3 years ago
- Causal Mixture Model for GWAS summary statistics☆87Updated last month
- ☆57Updated 10 months ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆89Updated last month
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- GWAS Summary Statistics Data Harmonisation☆25Updated last month
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆22Updated 3 months ago
- Pair-wise conditional analysis and colocalisation☆41Updated last year
- R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples☆67Updated 11 months ago
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- cfdr.pleio is an R package implementing conditional and conjunctional false discovery rates for studying pleiotropic gene variants betwee…☆18Updated 2 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Updated 4 years ago
- A collection of various utilities for GWAS summary statistics☆32Updated last year
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆34Updated 4 months ago
- R interface to the IEU GWAS database API☆103Updated last week
- Meta-analysis of genomewide association scans☆63Updated last year
- Partners Biobank genomics data QC☆30Updated 5 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆86Updated 3 years ago
- GWAS summary statistics files QC tool☆42Updated 11 months ago
- This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package☆45Updated last year