Alternatives and similar repositories for FLAMES

Users that are interested in FLAMES are comparing it to the libraries listed below

• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated 8 months ago
• hakyimlab / scPrediXcan
  ☆21Updated this week
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆25Updated this week
• precimed / gsa-mixer
  ☆16Updated 3 months ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆36Updated 5 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆23Updated 7 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆15Updated 3 weeks ago
• bhattacharya-a-bt / isotwas
  ☆22Updated 4 months ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆29Updated 2 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated last year
• lilab-bioinfo / xQTLbiolinks
  xQTLbiolinks: an R package for integrative analysis with xQTL data
  ☆16Updated last year
• cuelee / pleio
  ☆19Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆47Updated 2 weeks ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆17Updated 2 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 7 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆29Updated last year
• marcoralab / MRcovid
  ☆11Updated 2 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆34Updated 3 months ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 8 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆50Updated 4 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 7 months ago