Alternatives and similar repositories for MAGMA_Celltyping

Users that are interested in MAGMA_Celltyping are comparing it to the libraries listed below

• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆85Updated 11 months ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆59Updated 5 months ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆60Updated last year
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆95Updated 4 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆169Updated last week
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆63Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 3 months ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆33Updated 3 years ago
• rpolicastro / scProportionTest
  ☆71Updated last year
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆122Updated 7 months ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆85Updated 3 weeks ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆60Updated 7 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆117Updated 11 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated 2 months ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆105Updated 2 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆75Updated last month
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆52Updated 2 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 7 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆93Updated 8 months ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆52Updated last week
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆162Updated last year
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆104Updated 2 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆123Updated 9 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆43Updated 2 years ago