Find causal cell-types underlying complex trait genetics
☆92Feb 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for MAGMA_Celltyping
Users that are interested in MAGMA_Celltyping are comparing it to the libraries listed below
Sorting:
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Oct 31, 2025Updated 4 months ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆93Aug 16, 2024Updated last year
- ☆21Nov 15, 2024Updated last year
- Visualization of Colocalization Between eQTL and GWAS Data☆87May 13, 2022Updated 3 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 6 months ago
- An R package for creating ggplot2 based miami plots.☆18Mar 7, 2025Updated 11 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Dec 25, 2023Updated 2 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆24Feb 1, 2020Updated 6 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆12Feb 27, 2026Updated last week
- Single-cell disease relevance score (scDRS)☆177Sep 2, 2025Updated 6 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆44Oct 23, 2025Updated 4 months ago
- CELLEX (CELL-type EXpression-specificity)☆44Jun 2, 2023Updated 2 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Jun 15, 2021Updated 4 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- ☆20Sep 12, 2025Updated 5 months ago
- Scripts used for generating Neale Lab UKB results☆21Oct 11, 2022Updated 3 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated 11 months ago
- cfdr.pleio is an R package implementing conditional and conjunctional false discovery rates for studying pleiotropic gene variants betwee…☆18Feb 9, 2023Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆67Nov 23, 2025Updated 3 months ago
- High-definition likelihood inference of genetic correlations (HDL)☆128Dec 15, 2025Updated 2 months ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆94Jan 6, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆215Jan 4, 2026Updated 2 months ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 9 years ago
- Primo☆16Sep 2, 2021Updated 4 years ago
- Code used for the GWAS-by-subtraction of non-cognitive skills and follow-up analyses☆20Jan 15, 2021Updated 5 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated last month
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago