neurogenomics / MAGMA_CelltypingLinks
Find causal cell-types underlying complex trait genetics
☆92Updated 10 months ago
Alternatives and similar repositories for MAGMA_Celltyping
Users that are interested in MAGMA_Celltyping are comparing it to the libraries listed below
Sorting:
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆91Updated last year
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆119Updated 3 years ago
- Repo for the R package coloc☆186Updated last month
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆129Updated last year
- ☆35Updated last week
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- ☆38Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28Updated 2 years ago
- Easily download publicly available GWAS summary statistics.☆78Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆87Updated 3 years ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆94Updated last week
- ☆88Updated 5 months ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆66Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- ☆51Updated last month
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 5 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆38Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Updated 9 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆76Updated 5 years ago
- ☆74Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago