neurogenomics / MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
☆77Updated 3 months ago
Alternatives and similar repositories for MAGMA_Celltyping:
Users that are interested in MAGMA_Celltyping are comparing it to the libraries listed below
- ☆34Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated 2 months ago
- Easily download publicly available GWAS summary statistics.☆74Updated last year
- Visualization of Colocalization Between eQTL and GWAS Data☆78Updated 2 years ago
- Colocalization analysis of genetic association signals☆50Updated last month
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆90Updated 3 months ago
- ☆46Updated 2 months ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆78Updated last month
- Analyses conducting GWAS across the UKBB diverse superpopulations☆48Updated 3 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆97Updated last month
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆109Updated 2 years ago
- Reading, querying and writing GWAS summary data in VCF format☆73Updated 8 months ago
- ☆25Updated 6 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated last year
- methods for functional summary-based imputation☆78Updated 2 years ago
- ☆71Updated 2 years ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆74Updated 5 months ago
- LDlinkR☆57Updated 9 months ago
- ☆82Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆24Updated 3 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆54Updated 3 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆66Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆11Updated 6 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago