Find causal cell-types underlying complex trait genetics
☆93Feb 8, 2026Updated last month
Alternatives and similar repositories for MAGMA_Celltyping
Users that are interested in MAGMA_Celltyping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆61Updated this week
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆93Aug 16, 2024Updated last year
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆24Feb 1, 2020Updated 6 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 6 months ago
- An R package for creating ggplot2 based miami plots.☆18Mar 7, 2025Updated last year
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13Feb 27, 2026Updated 3 weeks ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 2 years ago
- ☆21Nov 15, 2024Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆87May 13, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 6 months ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Dec 25, 2023Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆94Jan 6, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated 2 months ago
- Single-cell disease relevance score (scDRS)☆177Sep 2, 2025Updated 6 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆45Mar 16, 2026Updated last week
- High-definition likelihood inference of genetic correlations (HDL)☆132Mar 15, 2026Updated last week
- Workbench demo project: cross-analysis of AoU and UKB.☆15May 2, 2023Updated 2 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Jun 15, 2021Updated 4 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- ☆93Jul 21, 2025Updated 8 months ago
- ☆35Jun 15, 2023Updated 2 years ago
- CELLEX (CELL-type EXpression-specificity)☆44Jun 2, 2023Updated 2 years ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆44Oct 23, 2025Updated 5 months ago
- Source code of FUMA GWAS web application☆59Nov 17, 2023Updated 2 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Primo☆16Sep 2, 2021Updated 4 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Jun 17, 2025Updated 9 months ago