Alternatives and similar repositories for hess

Users that are interested in hess are comparing it to the libraries listed below

• cuelee / pleio
  ☆19Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆53Updated 4 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated this week
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆29Updated last year
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆34Updated last week
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• clagiamba / moloc
  ☆35Updated 4 years ago
• qlu-lab / SUPERGNOVA
  ☆27Updated 3 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• thewonlab / H-MAGMA
  ☆33Updated 2 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 11 months ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆31Updated 9 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 2 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated 3 weeks ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆28Updated 8 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated last week
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆29Updated 3 weeks ago
• hakyimlab / scPrediXcan
  ☆23Updated 2 weeks ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆34Updated 4 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last week
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆29Updated 2 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year