Alternatives and similar repositories for hess

Users that are interested in hess are comparing it to the libraries listed below

• cuelee / pleio
  ☆19Updated 2 months ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated this week
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆32Updated last year
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆31Updated 7 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆36Updated last month
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 4 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆50Updated 5 months ago
• clagiamba / moloc
  ☆37Updated 4 years ago
• gamazonlab / MR-JTI
  ☆57Updated 9 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆34Updated 5 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆56Updated 4 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 4 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆50Updated 7 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago