sulab-wmu / scPagwasLinks
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆62Updated last month
Alternatives and similar repositories for scPagwas
Users that are interested in scPagwas are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- Methods for decontamination of single cell data☆54Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆21Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- scWGCNA☆61Updated 3 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated last month
- ☆41Updated 4 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 9 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated last year
- ☆50Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- ☆31Updated 9 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago