sulab-wmu / scPagwas
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆35Updated last week
Related projects ⓘ
Alternatives and complementary repositories for scPagwas
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆32Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated 2 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆35Updated 5 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆19Updated 4 months ago
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago
- Codes used in pan-T cell analysis☆49Updated last year
- ☆53Updated 10 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- ☆63Updated this week
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆47Updated this week
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆66Updated 2 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆54Updated 7 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆59Updated 2 years ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆24Updated 5 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆76Updated last year
- Methods for decontamination of single cell data☆29Updated 10 months ago
- Methods to discover gene programs on single-cell data☆84Updated this week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- ☆45Updated 9 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year