Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆82Nov 23, 2025Updated 9 months ago
Alternatives and similar repositories for scPagwas
Users that are interested in scPagwas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational framework☆20Jul 23, 2026Updated last month
- Single-cell disease relevance score (scDRS)☆199Aug 27, 2026Updated 3 weeks ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆54Dec 10, 2025Updated 9 months ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆102Aug 16, 2024Updated 2 years ago
- Tissue-Gene Fine-Mapping☆30Mar 20, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆23Apr 26, 2024Updated 2 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆60Apr 8, 2024Updated 2 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆66Aug 25, 2026Updated 3 weeks ago
- ☆46Jul 5, 2026Updated 2 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆37Jan 28, 2026Updated 7 months ago
- ☆20Aug 25, 2026Updated 3 weeks ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆29Jul 30, 2025Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆63Feb 12, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆16Oct 27, 2023Updated 2 years ago
- Python script for multivariate GWAS meta-analysis☆25Dec 6, 2024Updated last year
- ☆40Jan 20, 2021Updated 5 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆12Sep 1, 2022Updated 4 years ago
- ☆92Jul 28, 2026Updated last month
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 10 years ago
- GENI plots to visualise results from genome-wide association studies☆32Oct 14, 2024Updated last year
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆20Mar 30, 2021Updated 5 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated 2 years ago
- Reading, querying and writing GWAS summary data in VCF format☆111Jul 22, 2026Updated last month
- Create Regional Association Plots☆13May 27, 2026Updated 3 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆41Feb 8, 2025Updated last year
- ☆21Nov 15, 2024Updated last year
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- An R package for Mendelian Randomization in Mediation setting☆18Mar 17, 2025Updated last year
- Meta-analysis of drug target evidence in single-cell data☆17Oct 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- lhcMR☆26Mar 24, 2024Updated 2 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 6 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- Estimates partitioned heritability and enrichment for gene sets in complex human traits.☆27Sep 12, 2025Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- Codes for our NPNT paper at Nature Metabolism☆14Feb 9, 2024Updated 2 years ago