sulab-wmu / scPagwasLinks
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆48Updated 2 months ago
Alternatives and similar repositories for scPagwas
Users that are interested in scPagwas are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 3 weeks ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 6 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 2 weeks ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 5 months ago
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 2 weeks ago
- Methods for decontamination of single cell data☆47Updated 6 months ago
- ☆58Updated last year
- ☆38Updated last week
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆22Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- cell type specific, trait-associated gene regulation☆27Updated 5 months ago
- ☆27Updated 3 weeks ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- ☆57Updated 2 months ago
- ☆14Updated last year