sulab-wmu / scPagwas
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
☆37Updated 3 weeks ago
Alternatives and similar repositories for scPagwas:
Users that are interested in scPagwas are comparing it to the libraries listed below
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆33Updated 5 months ago
- ☆54Updated last year
- R package for pathway analysis in scRNA-seq data☆67Updated 5 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆36Updated 3 weeks ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated 2 weeks ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆24Updated 6 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆26Updated 7 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆48Updated last week
- R package for analysing single cell data☆50Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆69Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆63Updated 8 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆44Updated last month
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 4 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆41Updated 6 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆33Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Codes used in pan-T cell analysis☆53Updated last year
- An R package for visualising cell-cell interactions☆43Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆55Updated 9 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- ☆44Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 10 months ago