Alternatives and similar repositories for chronospace:

Users that are interested in chronospace are comparing it to the libraries listed below

• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated 7 months ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆17Updated 3 months ago
• gtrichard / mummer-ggplot
  Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
  ☆11Updated 3 years ago
• novikovalab / piawka
  The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
  ☆24Updated last month
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated last month
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated 10 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆21Updated this week
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆17Updated 2 months ago
• guillemylla / Crickets_Genome_Annotation
  Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
  ☆13Updated 2 years ago
• BenoitMorel / Asteroid
  ☆10Updated 11 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆11Updated 8 months ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆25Updated last month
• hemstrow / snpR
  ☆29Updated this week
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆35Updated 3 months ago
• rhysf / Diamond2GO
  ☆20Updated 5 months ago
• bpucker / MYB_annotator
  This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…
  ☆17Updated 6 months ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆12Updated 6 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆18Updated 3 months ago
• qiyunzhu / BeforePhylo
  Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
  ☆10Updated 10 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated 10 months ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆13Updated 2 years ago