thibautjombart / treespaceLinks
Explore spaces of phylogenetic trees
☆29Updated 5 months ago
Alternatives and similar repositories for treespace
Users that are interested in treespace are comparing it to the libraries listed below
Sorting:
- Calculate distances between phylogenetic trees in R☆35Updated this week
- babette is an R package to work with BEAST2☆46Updated last month
- R We There Yet?☆32Updated 10 months ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated 5 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- ☆20Updated 4 years ago
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- ☆36Updated last year
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Updated 5 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 6 months ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Updated last month
- initial commit☆26Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆28Updated 5 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 4 years ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Updated 7 years ago
- population genetic simulations with R and Shiny☆28Updated last year
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- ☆11Updated 9 months ago
- Bayesian species delimitation integrating genes and traits☆12Updated 4 years ago
- ☆20Updated last year
- R tools for posterior analyses using BEAST☆20Updated 6 years ago
- R package: Evolutionary biology in R☆20Updated 4 months ago
- Phylogenetic ANalyses of DiversificAtion☆27Updated 2 weeks ago
- Phylogenetic Likelihood Library 2 - experimental☆11Updated 9 months ago
- the hierfstat package☆25Updated last year
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 5 months ago
- A suite of methods and models for studying evolutionary radiations☆24Updated 2 years ago
- R package to run BEAST2☆11Updated 2 months ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆14Updated last month