thibautjombart / treespace
Explore spaces of phylogenetic trees
☆29Updated last year
Alternatives and similar repositories for treespace:
Users that are interested in treespace are comparing it to the libraries listed below
- Calculate distances between phylogenetic trees in R☆32Updated last month
- babette is an R package to work with BEAST2☆45Updated this week
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 9 months ago
- initial commit☆26Updated 2 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 8 months ago
- R package to run BEAST2☆11Updated last month
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated this week
- Phylogenetic ANalyses of DiversificAtion☆24Updated 2 months ago
- ☆33Updated 5 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 3 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- ☆19Updated 9 months ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated last year
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆23Updated 7 years ago
- ☆11Updated 2 years ago
- stackr: an R package to run stacks software pipeline☆29Updated this week
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆28Updated 3 weeks ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- R We There Yet?☆30Updated last week
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆40Updated 6 months ago
- Reproducible Phylogenomics☆22Updated 8 years ago
- Meta package for processing and visualizing tree with data☆27Updated 3 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆25Updated 3 weeks ago
- TreeScaper is distributed under the GNU General Public License.☆9Updated 5 years ago
- A suite of methods and models for studying evolutionary radiations☆23Updated 2 years ago
- ☆13Updated last year