thibautjombart / treespaceLinks
Explore spaces of phylogenetic trees
☆29Updated 4 months ago
Alternatives and similar repositories for treespace
Users that are interested in treespace are comparing it to the libraries listed below
Sorting:
- Calculate distances between phylogenetic trees in R☆35Updated last month
- babette is an R package to work with BEAST2☆46Updated last week
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- R We There Yet?☆32Updated 9 months ago
- ☆36Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- R package to run BEAST2☆11Updated 3 weeks ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- ☆19Updated 4 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 4 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Updated last year
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- Phylogenetic ANalyses of DiversificAtion☆26Updated last month
- population genetic simulations with R and Shiny☆28Updated last year
- ☆11Updated 7 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Updated 3 months ago
- DPPDIV☆12Updated 5 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 4 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11Updated 7 months ago
- Exploring the Phylogenetic Signal in Continuous Traits☆18Updated 6 months ago
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".☆11Updated 10 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated 3 months ago
- A suite of methods and models for studying evolutionary radiations☆24Updated 2 years ago
- Bayesian species delimitation integrating genes and traits☆12Updated 4 years ago
- ☆19Updated last month
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Compilation of tutorials for RevBayes☆22Updated 7 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- R package: Evolutionary biology in R☆19Updated 3 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year