Alternatives and similar repositories for treespace

Users that are interested in treespace are comparing it to the libraries listed below

• ms609 / TreeDist
  Calculate distances between phylogenetic trees in R
  ☆32Updated last week
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last month
• lamho86 / phylolm
  ☆37Updated 8 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 3 months ago
• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated 2 months ago
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated last year
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆24Updated 11 months ago
• revbayes / revbayes_tutorial
  Compilation of tutorials for RevBayes
  ☆22Updated 6 years ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated 2 months ago
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆44Updated 5 years ago
• mrborges23 / delta_statistic
  Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…
  ☆25Updated 4 years ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• hmorlon / PANDA
  Phylogenetic ANalyses of DiversificAtion
  ☆24Updated 6 months ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆56Updated 11 months ago
• mdkarcher / phylodyn
  ☆18Updated 3 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• thomasp85 / FindMyFriends
  Fast alignment-free pangenome creation and exploration
  ☆27Updated 5 years ago
• coleoguy / evobir
  R package: Evolutionary biology in R
  ☆17Updated last year
• KlausVigo / ggnetworx
  phylogenetic networks using ggplot2 and ggtree
  ☆13Updated 6 months ago
• cjbattey / driftR
  population genetic simulations with R and Shiny
  ☆28Updated 8 months ago
• kpmainali / CooccurrenceAffinity
  Computes affinity between two entities based on their co-occurrence
  ☆27Updated 2 weeks ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated last week
• reconhub / outbreaker2
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆35Updated 9 months ago
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated 2 years ago
• sdwfrost / influenza-dynamics-practical-h5n1
  Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
  ☆10Updated 11 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• ropensci / chromer
  package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/
  ☆12Updated last year
• duchene / phylomad
  ☆19Updated last year
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated last year