Explore spaces of phylogenetic trees
☆29Aug 28, 2025Updated 7 months ago
Alternatives and similar repositories for treespace
Users that are interested in treespace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆20Jun 15, 2024Updated last year
- R We There Yet?☆32Mar 27, 2025Updated last year
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated last year
- R2 for correlated data; see https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syy060/5098616☆17Aug 19, 2023Updated 2 years ago
- ☆16Aug 17, 2023Updated 2 years ago
- ☆26Apr 14, 2021Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Lightweight header-only C++ library for loading and traversing trees☆24Mar 9, 2025Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆21Jun 2, 2021Updated 4 years ago
- spruceup☆25Aug 15, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Mar 28, 2026Updated 2 weeks ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆11Apr 25, 2024Updated last year
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 11 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆42Mar 24, 2026Updated 3 weeks ago
- ☆18Dec 5, 2020Updated 5 years ago
- ☆13Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Mar 25, 2014Updated 12 years ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- identify potential non-animal transcripts in animal transcriptomes☆12Nov 11, 2020Updated 5 years ago
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- ☆11May 10, 2025Updated 11 months ago
- Some R functions☆14Mar 23, 2023Updated 3 years ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Calculate distances between phylogenetic trees in R☆36Apr 1, 2026Updated last week
- Phylogenetic ANalyses of DiversificAtion☆27Jan 27, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- What the Package Does (One Line, Title Case)☆13Nov 17, 2019Updated 6 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Feb 23, 2026Updated last month
- A book for teaching people how to do comparative methods in R☆22Jul 28, 2023Updated 2 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 4 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago