adamallo / SimPhyLinks
SimPhy: A comprehensive simulator of gene family evolution
☆33Updated 2 years ago
Alternatives and similar repositories for SimPhy
Users that are interested in SimPhy are comparing it to the libraries listed below
Sorting:
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 3 weeks ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- k-mer learning materials☆83Updated 11 months ago
- ☆66Updated 3 years ago
- ☆45Updated 9 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- ☆43Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆62Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- finshingTool☆54Updated 9 years ago
- Implementation of the multiple sequential markovian coalescent☆90Updated 5 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- Conditional Reciprocal Best Blast☆43Updated 8 years ago
- ☆29Updated last year
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Updated 6 months ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 8 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- ☆77Updated 7 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Updated last year
- General purpose population genetics software☆15Updated 6 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Updated 4 years ago